PlantDeepSEA Documentation

Welcome! This is the documentation for PlantDeepSEA, a deep learning web service based on Selene Python SDK and Django. The web sever address is located here. PlantDeepSEA is freely accessible for all users.

Citation : Hu Zhao#, Zhuo Tu#, Yinmeng Liu, Zhanxiang Zong, Jiacheng Li, Hao Liu, Feng Xiong, Jinling Zhan, Xuehai Hu, and Weibo Xie* (2021). PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants. Nucleic Acids Research, doi: 10.1093/nar/gkab383

Overview

• Home Page
• Model Selection
• Submit Task
• Query Results
• Interpretation of Results
  • Brief Description
  • Main Functions
  • About the result files
• Blast
• Case Studies
  • Case1: The DEP1 gene of rice
  • Case2: The UPA2 gene of maize
• Resources
  • Brief Description
  • Reference Genome Information (Download from Google Drive)
  • Reference Genome Information (Download from Baidu Cloud Disk Drive)
  • Trained model
  • Training data
  • Training config files
  • Model structure
  • A guide to applying the model locally
• Statistics
• Citation